Jaap van Pelt - Publications


Dr. Jaap van Pelt
Neuroinformatics Research Group
Department of Integrative Neurophysiology
Center for Neurogenomics and Cognitive Research
Vrije Universiteit Amsterdam
De Boelelaan 1085, 1081 HV Amsterdam
The Netherlands
E-mail: jaapvanpelt46@gmail.com
Homepage: http://www.jvanpelt.nl

 


Articles, bookchapters, books

Oscar Javier Avella Gonzalez, Huibert D. Mansvelder, Jaap van Pelt, Arjen van Ooyen (2015). H-channels affect frequency, power and amplitude fluctuations of neuronal network oscillations. Front. Comput.Neurosci.9:141. doi: 10.3389/fncom.2015.00141.
[PDF]

Jaap van Pelt, Arjen van Ooyen and Harry BM Uylings (2014). Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions. Frontiers in Neuroanatomy 8(54):1-16. doi: 10.3389/fnana.2014.00054.
[PDF] [Supplementary Material]

Oscar J. Avella Gonzalez, Karlijn I. van Aerde, Huibert D. Mansvelder, Jaap van Pelt, and Arjen van Ooyen (2014). Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern. PLoS ONE 9(7): e100899. doi:10.1371/journal.pone.0100899.
[PDF]

Hjorth JJJ, van Pelt J, Mansvelder HD, van Ooyen A (2014). Competitive Dynamics during Resource-Driven Neurite Outgrowth. PLoS ONE 9(2): e86741. doi:10.1371/journal.pone.0086741.
[PDF]

Michael P. McAssey, Fetsje Bijma, Bernadetta Tarigan, Jaap van Pelt, Arjen van Ooyen, Mathisca de Gunst (2014). A morpho-density approach to estimating neural connectivity. PLoS ONE 9(1): e86526. doi:10.1371/journal.pone.0086526.
[PDF]

Arjen van Ooyen, Andrew Carnell, Sander de Ridder, Bernadette Tarigan, Huibert Mansvelder, Fetsje Bijma, Mathisca de Gunst, Jaap van Pelt (2014). Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PLoS ONE 9(1): e85858. doi:10.1371.
[PDF]

Jaap van Pelt, Harry BM Uylings and Arjen van Ooyen (2013). Neuronal arborizations, spatial innervation and emergent network connectivity. In: The Computing Dendrite, Hermann Cuntz, Michiel M.H. Remme and Benjamin Torben-Nielsen (Eds.), Springer Series in Computational Neuroscience Volume 11, 2014, pp 61-78. (Book chapter)
[Preprint] [Springer Link]

Jaap van Pelt, Arjen van Ooyen (2013). Estimating neuronal connectivity from axonal and dendritic density fields. Front.Comput.Neurosci. 7:160. doi:10.3389/ fncom.2013.00160.
[PDF] [APPENDIX]

Oscar J. Avella Gonzalez, Karlijn I. van Aerde, Ronald A. J. van Elburg, Simon-Shlomo Poil, Huibert D. Mansvelder, Klaus Linkenkaer-Hansen, Jaap van Pelt, and Arjen van Ooyen (2012). External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. PLoS Comput Biol 8(8): e1002666. doi:10.1371/journal.pcbi.1002666.
[PDF]

Jaap van Pelt & Harry B.M. Uylings (2012). The flatness of bifurcations in 3D dendritic trees: an optimal design. Frontiers in Computational Neuroscience. 5:54. doi: 10.3389/fncom.2011.00054.
[PDF] [ Supplementary Material]

Linda van der Heiden, Ildikó Vajda, Jaap van Pelt and Arjen van Ooyen. (2011). Stimulation induced transitions in spontaneous firing rates in cultured neuronal networks also occur in the presence of synaptic plasticity blocker KN93. In: Advances in Cognitive Neurodynamics (II) - Proceedings ICCN2009. R. Wang, F. Gu (Eds.), Springer, pp. 151-155.
[PDF]

Jaap van Pelt, Andrew Carnell, Sander de Ridder, Huibert D. Mansvelder, Arjen van Ooyen (2010). An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies. Frontiers in Computational Neuroscience, doi:10.3389/fncom.2010.00148.
[PDF]

Randal A. Koene, Betty Tijms, Peter van Hees, Frank Postma, Sander de Ridder, Ger Ramakers, Jaap van Pelt, Arjen van Ooyen. (2009). NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics 7 (2009) 195-210.
[PDF]

Joost le Feber, Jaap van Pelt, and Wim L.C. Rutten (2009). Latency related development of functional connections in cultured cortical networks. Biophysical Journal 96 (2009) 3443-3450.
[PDF]

Michael A. Corner, Robert E. Baker, Jaap van Pelt (2008). Physiological consequences of selective suppression of synaptic transmission in developing cerebral cortical networks in vitro: Differential effects on intrinsically generated bioelectric discharges in a living model system for slow-wave sleep activity. Neurosci. Biobehav. Rev. 32 (2008) 1569-1600.
[PDF]

Jack Van Horn, Jaap van Pelt (2008). 1st INCF Workshop on Sustainability of Neuroscience Databases.
Nature Precedings (2008).
[PDF]

Jaap van Pelt, Gordon Shepherd (2008). 1st INCF Workshop on Global Portal Services for Neuroscience.
Nature Precedings (2008)
[PDF]

Van Pelt, J., Vajda, I., Wolters, P.S., Ramakers, G. and Van Ooyen, A. (2008). Effect of low-frequency stimulation on spontaneous firing in cultured neuronal networks. In: Advances in Cognitive Neurodynamics - Proceedings ICCN2007. Rubin Wang, Fanji Gu, Enhua Shen (Eds.), Springer, pp. 53-57.
[PDF]

Ildikó Vajda, Jaap van Pelt, Pieter Wolters, Michela Chiappalone, Sergio Martinoia, Eus van Someren, Arjen van Ooyen (2008). Low-frequency stimulation induces stable transitions in stereotypical activity in cortical networks. Biophys. J. 94 (2008) 5028-5039.
[PDF] [PubMed]

J. le Feber, W.L.C. Rutten, J. Stegenga, P.S. Wolters, G.J.A. Ramakers and J. van Pelt (2007). Conditional firing probabilities in cultured neuronal networks: a stable underlying structure in widely varying spontaneous activity patterns. J. Neural Eng. 4 (2007) 54-67.
[PDF]

Jaap van Pelt, Harry B.M. Uylings. Modeling neuronal growth and shape. In Modeling Biology - Structures, Behaviors, Evolution; Manfred D. Laubichler and Gerd B. Müller (eds). The MIT Press, 2007, Cambridge, pp. 195-215.
[Preprint]

Fabio Rigat, Mathisca de Gunst, Jaap van Pelt. Bayesian modelling and analysis of spatio-temporal neuronal networks. Bayesian Analysis 1 (2006) 733-764.
[PDF]

Robert E. Baker, Michael A. Corner, Jaap van Pelt. Spontaneous neuronal discharge patterns in developing organotypic mega-co-cultures of neonatal rat cerebral cortex. Brain Res 1101 (2006) 29-35.
[PDF]

Michael A. Corner, Robert E. Baker, Jaap van Pelt. Homeostatically regulated spontaneous neuronal discharges protect developing cerebral cortex networks from becoming hyperactive following prolonged blockade of excitatory synaptic receptors. Brain Res 1106 (2006) 40-45.
[PDF]

L. Berdondini, M. Chiappalone, P.D. van der Wal, K. Imfeld, N.F. de Rooij, M. Koudelka-Hep, M. Tedesco, S. Martinoia, J. van Pelt, G. Le Masson, A. Garenne. A microelectrode array (MEA) integrated with clustering structures for investigating in-vitro neurodynamics in confined interconnected sub-populations of neurons. Sensors & Actuators B: Chemical 114 (2006) 530-541.
[PDF]

Albertas Janulevicius, Jaap van Pelt and Arjen van Ooyen. Compartment volume influences microtubule dynamic instability: a model study. Biophysical Journal, Vol. 90 (2006) 788-798.
[PDF]

Van Pelt, J., Van Galen, E., Wolters, P., Ramakers, G.J.A., Vajda, I. (2006) Effects of low-frequency stimulation on spontaneous firing dynamics in dissociated cortical cultures on multi-electrode arrays. Proceedings MEA Meeting 2006, BIOPRO edition vol.3, BIOPRO Baden-Wurttemberg Gmbh, Stuttgart, 2006, Germany, pp 19-21.
[PDF]

Jaap van Pelt and Harry B.M. Uylings (2005) Natural variability in the geometry of dendritic branching patterns. In: Modeling in the Neurosciences: From Biological Systems to Neuromimetic Robotics, G.N. Reeke, R.R. Poznanski, K.A. Lindsay, J.R. Rosenberg, O. Sporns (Eds.), CRC Press, 2005, pp. 89-115.
[PDF]

Development, Dynamics and Pathology of Neuronal Networks: from Molecules to Functional Circuits, J. van Pelt, M. Kamermans, C.N. Levelt, A. van Ooyen, G.J.A. Ramakers, P.R. Roelfsema (Eds.), Progr. Brain Res. Vol. 147 (2005) Elsevier (Book), 385 pages.
[Table of Contents]

Corner, M.A., Baker, R.E., Van Pelt, J. and Wolters, P.S. Compensatory physiological responses to chronic blockade of amino acid receptors during early development in spontaneously active organotypic cerebral cortex explants cultured in vitro. Prog. Brain Res. 147 (2005) 231-248.
[PDF]

Swaab, D.F., Van Pelt, J. and Hofman, M. Introduction to the sixteenth C.U. Ariëns Kappers Lecture. Prog. Brain Res. 147 (2005) 39-41.
[PDF]

Van Pelt, J., Vajda, I., Wolters, P.S., Corner, M.A., Ramakers, G.J.A. Dynamics and plasticity in developing neuronal networks in vitro. Prog. Brain Res. 147 (2005) 173-188.
[PDF]

Chiappalone, M., Novellino, A., Vajda, I., Vato, A., Martinoia, S., and Van Pelt, J. Burst detection algorithms for the analysis of spatio-temporal patterns in cortical networks of neurons. Neurocomputing 65-66 (2005) 653-662.
[PDF]

Van Pelt, J., Wolters, P.S., Corner, M.A., Rutten, W.L.C., Ramakers, G.J.A. Long-term characterization of firing dynamics of spontaneous bursts in cultured neural networks. IEEE-TBME 51 (2004) 2051-2062.
[PDF]

Barbosa, M.S., Costa, L. da F., Bernardes, E.S., Ramakers, G., Van Pelt, J. Characterizing neuromorphologic alterations with additive shape functionals. Eur. Phys. J. B 37 (2004) 109-115.
[Abstract: html] [PDF]

Martinoia, S., Sanguineti, V., Cozzi, L., Berdondini, L., Van Pelt, J., Tomas, J., LeMasson, G., Davide, F. Towards an embodied in-vitro electrophysiology: the NeuroBIT project. Neurocomputing 58-60 (2004) 1065-1072.
[PDF]

Van Pelt, J. Corner, M.A., Wolters, P.S., Rutten, W.L.C., Ramakers, G.J.A. Longterm stability and developmental changes in spontaneous network burst firing patterns in dissociated rat cerebral cortex cell cultures on multi-electrode arrays. Neurosci. Lett. 361/1-3 (2004) 86-89.
[PDF]

Van Pelt, Jaap, Schierwagen, Andreas. Morphological analysis and modeling of neuronal dendrites. Math. Biosc. 188 (2004) 147-155.
[PDF]

Heinen, K. Bosman, L.W.J., Spijker, S., Van Pelt, J., Smit, A.B., Voorn, P., Baker, R.E., and Brussaard, A.B. GABA-A receptor maturation in relation to eye opening in the rat visual cortex. Neuroscience 124 (2004) 161-171.
[PDF]

Heinen, K., Baker, R.E., Spijker, S., Rosahl, T., Van Pelt, J., Brussaard, A.B. Impaired dendritic spine maturation in GABA-A receptor alpha-1 subunit knock out mice. Neuroscience 122 (2003) 699-705.
[PDF]

Eckersley, P., Egan, G.F., Amari S-I., Beltrame, F., Bennett, R., Bjaalie, J.G., Dalkara, T., De Schutter, E., Gonzalez, C., Grillner, S., Herz, A., Hoffman, K.P., Jaaskelainen, I.P., Koslow, S.H., Lee, S-Y., Matthiessen, L., Miller, P.L., Da Silva, F.M., Novak, M., Ravindranath, V., Ritz, R., Ruotsalainen, U., Subramaniam, S., Toga, A.W., Usui, S., Van Pelt, J., Verschure, P., Willshaw, D., Wrobel, A., and Yiyuan, T. (2003) Neuroscience data and tool sharing - A legal and policy framework for neuroinformatics. Neuroinformatics Journal 1: 149-166.
[PDF]

Van Pelt, J., Uylings, H.B.M. (2003) Growth functions in dendritic outgrowth. Brain and Mind 4: 51-65.
[PDF]

Van Ooyen, A., J. van Pelt, M.A. Corner and S.B. Kater. (2003) Activity-dependent neurite outgrowth: implications for network development and neuronal morphology. In: Modeling Neural Development, A. van Ooyen (Ed.), The MIT Press, Cambridge, Massachusets, 2003, pp. 111-132. (Book chapter)
[PDF]

Van Pelt, J., B. Graham and H.B.M. Uylings, (2003) Formation of dendritic branching patterns. In: Modeling Neural Development, A. van Ooyen (Ed.), The MIT Press, Cambridge, Massachusets, 2003, pp. 75-94. (Book chapter)
[Preprint]

Granato, A., Van Pelt, J. (2003) Effects of early ethanol exposure on dendrite growth of cortical pyramidal neurons: inferences from a computational model. Dev Brain Res. 142 (2): 223-227.
[PDF]

Andreas Schierwagen and Jaap van Pelt (2002) Quantifying neuronal morphology. A case study of the growth model approach. In: Bildverarbeitung für die Medizin 2002, Algorithmen, Systeme, Anwendungen. Informatik Aktuell Springer-Verlag 2002, pp. 255-258. (Book chapter)
[PDF]

Amari, S.I., Beltrame, F., Bjaalie, J.G., Dalkara, T., De Schutter, E., Egan, G.F., Goddard, N.H., Gonzales, C., Grillner, S., Herz, A., Hoffman, K.-P., Jaaskelainen, I., Koslow, S.H., Lee, S.-Y., Matthiessen, L., Miller, P.L., Da Silva, F.M., Novak, M., Ravindranath, V., Ritz, R., Ruotsalainen, V., Sebestra, V., Subramaniam, S., Toga, A.W., Usui, S., Van Pelt, J., Verschure, P., Willshaw, D., Wrobel, A., Yiyuan, T. (2002) Neuroinformatics: the integration of shared databases and tools towards integrative neuroscience. J. Integrative Neuroscience 1: 117-128.
[Abstract]
[PDF]

Streekstra, G.J. and J. van Pelt. (2002) Analysis of tubular structures in three-dimensional confocal images. Network: Comput. Neural Syst. 13: 381-395.
[Abstract] [PDF]

Van Pelt, J. and H.B.M. Uylings. (2002) Branching rates and growth functions in the outgrowth of dendritic branching patterns. Network: Comput. Neural Syst. 13: 261-281.
[Abstract] [PDF]

Da Fontoura Costa, L. E.T.M. Manoel, F. Faucereau, J. Chelly, J. van Pelt and G.J.A. Ramakers. (2002) A shape analysis framework for neuromorphometry. Network: Comput. Neural Syst. 13: 283-310.
[Abstract] [PDF]

Van Ooyen, A., Duijnhouwer, J., Remme, M.W.H. and J. van Pelt. (2002) The effect of dendritic topology on firing patterns in model neurons. Network: Comput. Neural Syst. 13: 311-325.
[Abstract] [PDF]

Uylings, H.B.M. and J. van Pelt. (2002) Measures for quantifying dendritic arborizations. Network: Comput. Neural Syst. 13: 397-414.
[Abstract] [PDF]

Van Pelt, J. (2002) Quantitative Neuroanatomy and Neuroinformatics. Editorial Special Issue Quantitative Neuroanatomy Tools. Network: Comput. Neural Syst. 13: 243-245.
[Editorial]

Van Ooyen, A. and J. van Pelt. (2002) Competition in neuronal morphogenesis and the development of nerve connections. In: Computational Neuroanatomy: Principles and Methods, G. Ascoli (Ed.), The Humana Press Inc, Totowa, NJ, pp. 219-244. (Book chapter)
[PDF]

Corner, MA, Van Pelt J, Wolters PS, Baker RE, Nuytinck R (2002) Physiological effects of sustained blockade of excitatory synaptic transmission on spontaneously active developing neuronal networks - an inquiry into the reciprocal linkage between intrinsic biorhythms and neuroplasticity in early ontogeny. Neurosci Biobehav Rev 26: 127-185.
[PubMed]
[PDF]

Van Pelt, J., Wolters, P.S., Rutten, W.L.C., Corner, M.A., Van Hulten, P. and Ramakers, G.J.A. (2001). Spatio-temporal firing in growing networks cuultured on multi-electrode arrays. In: Proc. World Congress on Neuroinformatics, F. Rattay (Ed.) Argesim/Asim Verlag, Vienna, 2001, pp 462-467.
[PDF]

Van Pelt, J., Van Ooyen, A. and Uylings, H.B.M. (2001) The need for integrating neuronal morphology databases and computational environments in exploring neuronal structure and function. Anat Embryol 204: 255-265.
[PubMed] [PDF]

Van Pelt, J., A. Schierwagen and H.B.M. Uylings. (2001) Modeling dendritic morphological complexity of deep layer cat superior colliculus neurons. Neurocomputing 38-40: 403-408.
[PDF]

Duijnhouwer, J., M. Remme, A. van Ooyen and J. van Pelt (2001) Influence of dendritic topology on firing patterns in model neurons. Neurocomputing 38-40: 183-189.
[PDF]

Ramakers, G.J.A., Avci, B., Van Hulten, P., Van Ooyen, A., Van Pelt, J., Pool, C. and M.B. Lequin. (2001) The role of calcium signaling in early axonal and dendritic morphogenesis of rat cerebral cortex neurons under non-stimulated growth conditions. Dev. Brain Res. 126: 163-172.
[PubMed] [PDF]

Rutten, W.L.C., Ruardij, T.G., Van Pelt, J. (2001) Neuronal networks on 'Cultured Probe' micro electrode arrays: network confinement and activity patterns, Proceedings of the atlantic symposium on computational biology and genome information systems & technology, March 15-17 2001, Durham, North Carolina USA, pp. 101-105, ISBN 0-9707890-0-09

Rutten, W.L.C., Van Pelt, J. (2001) Activity patterns of cultured neural networks on micro electrode arrays. In: Proc. 23rd Annual EMBS International Conference, October 25-28, Istanbul, Turkey, pp. 737-740.
[PDF]

Van Pelt, J., Van Ooyen, A., Uylings, H.B.M. (2001) Modeling dendritic geometry and the development of nerve connections. In: Computational Neuroscience: Realistic modeling for experimentalist (E. de Schutter, Ed. and R.C. Cannon (CD-ROM)), CRC Press, Boca Raton, pp.179-208.
(Book chapter), [Preprint]

Tjeerd olde Scheper, Don Klinkenberg, Cyriel Pennartz and Jaap van Pelt (1999) A mathematical model for the intracellular circadian rhythm generator. J. Neuroscience 19: 40-47.
[PubMed] [PDF]

Olde Scheper, T., D. Klinkenberg, J. van Pelt and C. Pennartz (1999) A model of molecular circadian clocks: Multiple mechanisms for phase shifting and a requirement for strong nonlinear interactions. J. Biol. Rhythms 14: 213:220.
[PubMed] [PDF]

Van Pelt, J. and Harry B.M. Uylings (1999) Modeling the natural variability in the shape of dendritic trees: application to basal dendrites of small rat cortical layer 5 pyramidal neurons. Neurocomputing 26-27: 305-311.
[PDF]

Van Pelt, J. and H.B.M. Uylings. (1999). Natural variability in the geometry of dendritic branching patterns. In: Modeling in the Neurosciences: From Ionic Channels to Neural Networks (R.R. Poznanski, Ed.), Harwood Academic Publishers, Amsterdam, pp.79-108. (Book chapter)

Baker, R.E., Dijkhuizen, P.A., Van Pelt, J. and J. Verhaagen (1998) Growth of pyramidal, but not non-pyramidal, dendrites in long-term organotypic explants of neonatal rat neocortex chronically exposed to neurotrophin-3. Eur. J. Neurosc. 10: 1037-1044.
[PubMed] [PDF]

Ramakers, G.J.A., Winter, J., Hoogland, T., Lequin, M.B., Van Pelt, J. and C.W. Pool (1998) Depolarization stimulates lamellipodia formation and axonal but not dendritic branching in cultured rat cerebral cortex neurons. Developm. Brain Res. 108: 205-216.
[PubMed] [PDF]

Ramakers, G.J.A., F. Kloosterman, P. van Hulten, J. van Pelt and M.A. Corner. (1998). Activity-dependent regulation of neuronal network excitability. In: Neural Circuits and Networks, NATO ASI Series F: Computer and Systems Sciences, Vol. 167 (V. Torre and J. Nicholls, Eds.) Springer Verlag, Berlin, pp. 141-151. (Book chapter).

Baker, R.E. and J. van Pelt (1997) Cocultured, but not isolated, cortical explants display normal dendritic development: a long-term quantitative study. Dev. Brain Res. 98: 21-29.
[PubMed] [PDF]

Van Pelt, J. (1997) Effect of pruning on dendritic tree topology. J. Theor. Biol. 186: 17-32.
[PubMed] [PDF]

Van Pelt, J., Dityatev, A.E. and H.B.M. Uylings (1997) Natural variability in the number of dendritic segments: Model-based inferences about branching during neurite outgrowth. J. Comp. Neurol. 387: 325-340.
[PDF]

Baker, R.E., Wolters, P., Van Pelt, J. (1997) Chronic blockade of glutamate-mediated bioelectric activity in long-term organotypic neocortical explants differentially effects pyramidal/non-pyramidal dendritic morphology. Dev. Brain Research 104: 31-39.
[PubMed] [PDF]

Van Pelt, Jaap, Dityatev, Alexander E., Schierwagen, Andreas. (1997) On the generation of random dendritic shapes. In: Computational Neuroscience: Trends in Research (J.M. Bower, Ed) Plenum Press. New York, pp. 203-207. (Book chapter)
[PubMed]

Van Ooyen, A., Van Pelt, J. (1996) Complex periodic behaviour in a neural network model with activity-dependent neurite outgrowth. J. Theor. Biol. 179: 229-242.
[PDF] [PubMed]

Van Ooyen, A., Pakdaman, K., Houweling, A.R., Van Pelt, J. and J.-F. Vibert (1996) Network connectivity changes through activity-dependent neurite outgrowth. Neural Processing Letters 4: 1-8.
[PDF]

Van Pelt, J., Van Ooyen, A. and Corner, M.A. (1996) Growth cone dynamics and activity-dependent processes in neuronal network development. In: Progress in Brain Research, Vol. 108, Neural Development and Plasticity (R.R. Mize and R.S. Erzurumlu, Eds.) Elsevier, Amsterdam, pp. 333-346. (Book chapter)
[PubMed] [PDF]

Van Pelt, J., Wolters, P., Van Veen, D., Bomer, J., Rutten, W., Overdijk, H., Ramakers, G.J.A. (1996) Long-term multielectrode registration of neuronal firing activity from rat cerebral cortex tissue in-vitro. Proceedings 18th Annual International Conference of IEEE Engineering in Medicine and Biology Society, "Bridging Disciplines for Biomedicine". 31 October-3 November, Amsterdam, The Netherlands (CDROM). (Book chapter)
[PDF]

Neurocomputing. Vol. 11 (Nrs. 2-4). (1996) Special Triple Issue on Biological Neural Networks (K. Fukushima, S.K. Aityan, T.J. Anastasio and J. van Pelt, Guest Editors). Elsevier, Amsterdam. (Book)
[Guest editorial]

Van Ooyen, A., Van Pelt, J., Corner, M. A. (1995) Implications of activity-dependent neurite outgrowth for neuronal morphology and network development. J. Theor. Biol. 172: 63-82.
[PDF] [PubMed]

Schierwagen A. and J. van Pelt (1995) Shaping neuronal dendrites: Interplay of topological and metrical parameters. J. Biol. Systems 3(4): 1193-1200
[PDF]

Van Pelt, J. and A. Schierwagen. (1995) Impact of topological variability on dendritic geometry. J. Biol. Systems 3(4): 1201-1210
[PDF]

Van Pelt, Jaap and Andreas Schierwagen. (1995). Dendritic electrotonic extent and branching pattern topology. In: The Neurobiology of Computation, (James M. Bower, Ed.). Kluwer Academic Publishers, pp. 153-158. (Book chapter)
[Preprint]

Van Ooyen, A., Van Pelt, J. (1994) Activity-dependent outgrowth of neurons and overshoot phenomena in developing neural networks. J. Theor. Biol. 167: 27-43.
[PDF]

Van Veen, M.P. and J. van Pelt (1994) Neuritic growth rate described by modeling microtubule dynamics. Bull. math. Biol. 56: 249-273.
[PubMed] [PDF]

Van Pelt, J., A. Schierwagen (1994) Electrotonic properties of passive dendritic trees - effect of dendritic topology. In: J. van Pelt, M.A. Corner, H.B.M. Uylings and F.H. Lopes da Silva, (Eds.), Progress in Brain Research, Vol. 102, The Self-Organizing Brain: From Growth Cones to Functional Networks. Elsevier, Amsterdam, pp. 127-149.
[PubMed] [PDF]

Van Veen, M.P , J. van Pelt (1994) Dynamic mechanisms of neuronal outgrowth. In: J. van Pelt, M.A. Corner, H.B.M. Uylings and F.H. Lopes da Silva, (Eds.), Progress in Brain Research, Vol. 102, The Self-Organizing Brain: From Growth Cones to Functional Networks. Elsevier, Amsterdam, pp. 95- 108.
[PubMed] [PDF]

Uylings, H.B.M., J. van Pelt, J.G. Parnavelas and A. Ruiz-Marcos (1994) Geometrical and topological characteristics in the dendritic development of cortical pyramidal and nonpyramidal neurons. In: J. van Pelt, M.A. Corner, H.B.M. Uylings and F.H. Lopes da Silva, (Eds.), Progress in Brain Research, Vol. 102, The Self-Organizing Brain: From Growth Cones to Functional Networks. Elsevier, Amsterdam, pp. 109-123.
[PubMed] [PDF]

Van Ooyen, A. and J. van Pelt (1994) Activity-dependent neurite outgrowth and neural network development. In: J. van Pelt, M.A. Corner, H.B.M. Uylings and F.H. Lopes da Silva, (Eds.), Progress in Brain Research, Vol. 102, The Self-Organizing Brain: From Growth Cones to Functional Networks. Elsevier, Amsterdam, pp. 245-259.
[PubMed]

Van Ooyen, A., Van Pelt, J. (1994) Complex patterns of oscillations in a neural network model with activity-dependent outgrowth. In: Artificial Neural Networks (Marino, M., and Morasso, P.G., Eds.) pp. 146-149. (Book chapter)

The Self-Organizing Brain: From Growth Cones to Functional Networks. J. van Pelt, M.A. Corner, H.B.M. Uylings and F.H. Lopes da Silva (Eds.) Progress in Brain Research, Vol. 102 (1994) Elsevier, Amsterdam. (Book)

Van Veen, M.P. and J. van Pelt (1993) Terminal and intermediate segment lengths in neuronal trees with finite length. Bull. Math. Biol. 55: 277-294.
[PubMed] [PDF]

Van Ooyen, A. and J. van Pelt. (1993) Implications of activity-dependent neurite outgrowth for developing neural networks. In: Artificial Neural Networks (Gielen, S., Kappen, B., Eds.) Springer, pp. 177-182. (Book chapter)
[PDF]

Van Ooyen, A., J. van Pelt, M.A. Corner and F.H. Lopes da Silva. (1992) Long-lasting transients of activation in neural networks. Neurocomputing 4: 75-87.
[PDF]

Van Pelt, J., H.B.M. Uylings, R.W.H. Verwer, R.J. Pentney and M.J. Woldenberg. (1992) Tree asymmetry - a sensitive and practical measure for binary topological trees. Bull. Math. Biol. 54: 759-784.
[PubMed] [PDF]

Van Ooyen, A., Van Pelt, J., Corner, M. A., Lopes da Silva, F. H. (1992) The emergence of long-lasting transients of activity in simple neural networks. Biol. Cybern. 67: 269-277.
[PubMed] [PDF]

Van Veen, M.P. and J. van Pelt (1992) A model for outgrowth of branching neurites. J. Theor. Biol. 159: 1-23.
[PDF]

Van Pelt, Jaap (1992) A simple vector implementation of the Laplace-transformed cable equations in passive dendritic trees. Biol. Cybern. 68: 15-21.
[PubMed] [PDF]

Van Ooyen, A. and J. van Pelt. (1992) Phase transitions, hysteresis and overshoot phenomena in developing neural networks. In: Artificial Neural Networks 2 (I. Alexander and J.G. Taylor, Eds) Elsevier, pp. 907-910. (Book chapter)
[PDF]

Verwer, R.W.H., J. van Pelt and H.B.M. Uylings. (1992) An introduction to topological analysis of neurones. In: Quantitative Methods in Neuroanatomy (M.G. Stewart, Ed.), John Wiley & Sons, pp. 295-323. (Book chapter)
[PDF]

Verwer, Ronald W.H. and Jaap van Pelt (1990) Analysis of binary trees when occasional multifurcations can be considered as aggragates of bifurcations. Bull. Math. Biol. 52: 629-641.
[PubMed] [PDF]

Van Pelt, J., M.J. Woldenberg and R.W.H. Verwer (1989) Two generalized topological models of stream network growth. J. Geol. 97: 281-299.
[PDF]

Van Pelt, J., Uylings, H.B.M. and Verwer, R.W.H. (1989) Distributional properties of measures of tree topology. Acta Stereol. 8: 465-470.
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Van Pelt, J., R.W.H. Verwer and H.B.M. Uylings (1989) Centrifugal-order distributions in binary topological trees. Bull. Math. Biol. 51: 511-536.
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Uylings, Harry B.M., Jaap van Pelt and Ronald W.H. Verwer (1989). Topological analysis of individual neurons. In: Computer Techniques in Neuroanatomy. (J.J. Capowski, Ed.), Plenum, New York, pp. 215-239. (Book Chapter 10)
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Uylings, Harry B.M., Jaap van Pelt, Ronald W.H. Verwer and Patricia McConnell. (1989) Statistical analysis of neuronal populations. In: Computer Techniques in Neuroanatomy (J.J. Capowski, Ed.), Plenum, pp. 241-264. (Book Chapter 11)
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Van Pelt, J. and R.W.H. Verwer (1987) Mean centrifugal order as a measure for branching pattern topology. Acta Stereol. 6: 393-397.
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Verwer, R.W.H. J. vand Pelt and A.J. Noest (1987) Parameter estimation in topological analysis of binary tree structures. Bull. Math. Biol. 49: 363-387.
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Verwer, R.W.H. and J. Van Pelt (1987) Multifurcations in topological trees: growth models and comparative analysis. Acta Stereol. 6: 399-404.
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Van Pelt J. and R.W.H. Verwer (1986) Topological properties of binary trees grown with order-dependent branching probabilities. Bull. Math. Biol. 48: 197-211.
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Van Pelt, J., R.W.H. Verwer and H.B.M. Uylings (1986) Application of growth models to the topology of neuronal branching patterns. J. Neurosci. Meth. 18: 153-165.
[PubMed] [PDF]

Verwer, R.W.H. and J. van Pelt (1986) Descriptive and comparative analysis of geometrical properties of neuronal tree structures. J. Neurosci. Meth. 18: 179-206.
[PubMed] [PDF]

Uylings, H.B.M., A. Ruiz-Marcos and J. van Pelt (1986) The metric analysis of three-dimensional dendritic tree patterns: a methodological review. J. Neurosci. Meth. 18: 127-151.
[PubMed] [PDF]

Morphometry and Stereology in Neurosciences, H.B.M. Uylings, R.W.H. Verwer and J. van Pelt (Eds.), J. Neurosc. Meth., Special Issue, Vol. 18 (1986), Elsevier, Amsterdam. pp. 1-242. (Book)
[Preface]

Van Pelt, J. and R.W.H. Verwer (1985) Growth models (including terminal and segmental branching) for topological binary trees. Bull. Math. Biol. 47: 323-336.
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Van Pelt, J. and R.W.H. Verwer (1985) Growth models for topological binary branching patterns. Acta Stereol. 4: 159-164.
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Verwer, Ronald W.H. and Jaap van Pelt (1985) Topological analysis of binary tree structures when occasional multifurcations occur. Bull. Math. Biol. 47: 305-316.
[PubMed] [PDF]

Verwer, Ronald W.H., Jaap van Pelt and Harry B.M. Uylings (1985) A simple statistical test for the vertex ratio using Monte Carlo simulation J. Neurosc. Meth. 14: 137-142.
[PubMed] [PDF]

Van Pelt, J. and R.W.H. Verwer (1984) Cut trees in the topological analysis of branching patterns. Bull. Math. Biol. 46: 283-294.
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Van Pelt, J. and R.W.H. Verwer (1984) New classification methods of branching patterns. J. Microsc. 136: 23-34.
[PubMed]] [PDF]

Van Eden, C.G., H.B.M. Uylings and J. van Pelt (1984) Sex difference and left-Right asymmetries in the Prefrontal Cortex during postnatal development in the Rat. Developmental Brain Research 12: 146-153.
[PubMed]

Uylings, H.B.M., R.W.H. Verwer, J. van Pelt and J.G. Parnavelas (1983) Topological analysis of dendritic growth at various stages of cerebral development. Acta Stereol. 2: 55-62.
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Verwer, R.W.H. and J. van Pelt (1983) A new method for the topological analysis of neuronal tree structures. J. Neurosc. Meth. 8: 335-351.
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Van Pelt, J. and R.W.H. Verwer (1983) The exact probabilities of branching patterns under terminal and segmental growth hypotheses. Bull. Math. Biol. 45: 269-285.
[PubMed] [PDF]

Swanson, H.H., N.E. van de Poll and J. van Pelt (1983) Heterosexual aggression during the oestrus cycle in two strains of rats (S3 and Wezob). Aggressive Behaviour 8: 185-187.

Swanson, H.H., N.E. van de Poll and J. van Pelt (1982) Influence of the estrous cycle on heterosexual aggression in two strains of rats (S3 and Wezob). Hormones and Behavior 16: 395-403.
[PubMed]

Van de Poll, N.E., F. de Jonge, H.G. van Oyen and J. van Pelt (1982) Aggressive behaviour in rats: effects of winning or losing on subsequent aggressive interactions. Behav. Proc. 7: 143-155.

Van de Poll, N.E., F. de Jonge, H.G. van Oyen, J. van Pelt and J.P.C. de Bruin (1981) Failure to find sex differences in testosterone activated aggression in two strains of rats. Hormones and Behavior 15: 94-105.
[PubMed]

Van Pelt, J. and J. Blok (1979) The electron capture decay of Au196. Nucl. Phys. A313: 109-118.
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Gerner, C.P., J. van Pelt, O.W. de Ridder and J. Blok (1978) The electron capture decay of Ag106m. Nucl. Phys. A295: 221-227.
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Van Pelt, J., C.P. Gerner, O.W. de Ridder and J. Blok (1978) The electron capture decay of Ba131. Nucl. Phys. A295: 211-220.
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Thesis
Van Pelt, J. (1978) Electron-capture ratios in radio-active decay measured by means of an internal-source method. Vrije Universiteit, Amsterdam.

Goverse, S.C., Van Pelt, J., Van den Berg, J., Klein, J.C. and Blok, J. (1973) The electron capture decay of Au195. Nucl. Phys. A201: 326-336.
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